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Peter Rice

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Latest activity by Peter Rice
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    Peter Rice commented,

    Official comment

    The developers have a new ETL product for i2b2/tranSMART which is schedules to be released with the production version of the platform. We have started a new set of articles here to document this t...

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    Peter Rice created an article,

    Workflow Scripts for the new ETL Tool

    ETLToolSuite-WorkflowScripts - Data Load Example This read me will be a walkthrough on loading the Docker Quick Start database. Author: Thomas DeSain Example Prerequistes Quick Start docker stack...

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    Peter Rice created an article,

    Using the new ETL tool

    ETLToolSuite-EntityGenerator This tool will generate Entity Files that can be used to load into Datasources. Author: Thomas DeSain Example Prerequistes Admin rights to machine hosting docker Quic...

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    Peter Rice created an article,

    Loading NHANES data with the new ETL client

    Load NHANES data subset The following will give examples on how to load subsets of Nhanes data into I2B2 / Transmart   Prerequisites Admin rights to machine hosting docker. Quick Start docker stack...

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    Peter Rice created an article,

    Fractalis

    Fractalis New version of methods in the smartR analysis platform from tranSMART 16.2 using the PIC-SURE API References Original document http://roadmap-i2b2-transmart-pmc.hms.harvard.edu

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    Peter Rice created an article,

    i2b2

    i2b2 Code from i2b2 v1.7.09c Clinical / low-dimensional data storage Patient cohort storage Is there any case where patients exist in the high-dimensional data but do not exist in the clinical / lo...

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    Peter Rice created an article,

    tranSMART

    tranSMART Integrating code from tranSMART 16.2, changes to be merged into tranSMART 16.4 in late 2018. Hypothesis validation, basic analysis that can be built on later using JupyterHub/PIC-SURE API...

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    Peter Rice created an article,

    JupyterHub/PIC-SURE API

    JupyterHub/PIC-SURE API Access to the raw data for advanced analysis of patient level data and the ability to publish real research from the data in i2b2 References Original document http://roadma...

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    Peter Rice created an article,

    SOLR

    SOLR Currently used for sample explorer, radiology explorer, could have other uses but the functionality is exposed through tranSMART itself. References Original document http://roadmap-i2b2-trans...

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    Peter Rice created an article,

    Authentication/authorization component

    Authentication/authorization component Authentication and authorization should be pluggable, LDAP/OAuth/SAML, support for each should be able to be implemented separately without forcing anyone to ...